SRR23968972 - Lonchodes brevipes

Basic Information

Run: SRR23968972

Assay Type: AMPLICON

Biosample: SAMN33877356

Bytes: 25929754

Center Name: YALE-NUS COLLEGE

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA948164

Geographic Information

Country: Singapore

Continent: Asia

Location Name: Singapore

Latitude/Longitude: 1.18 N 103.46 E

Sample Information

Host: Lonchodes brevipes

Isolation: -

Biosample Model: -

Collection Date: 2020-07-01

Host Sex: -

Environmental Information

Broad Scale: tropics

Local Scale: urban park

Medium: plant leaves

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR23968972
24.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 9
Aerobic_Chemoheterotrophy 7
Methanol_Oxidation 2
Methylotrophy 2
Aromatic_Compound_Degradation 2
Ureolysis 2
Nitrogen_Fixation 1
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