SRR23459780 - Homalodisca vitripennis

Basic Information

Run: SRR23459780

Assay Type: AMPLICON

Biosample: SAMN33295350

Bytes: 8592889

Center Name: UNIVERSITY OF CALIFORNIA, RIVERSIDE

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA934966

Geographic Information

Country: USA

Continent: North America

Location Name: USA:General Beale Kern County, California

Latitude/Longitude: 35.2696228 N 118.7613945 W

Sample Information

Host: Homalodisca vitripennis

Isolation: -

Biosample Model: -

Collection Date: 2020-01-01

Host Sex: female

Environmental Information

Broad Scale: terrestrial biome | urban biome | agricultural biome

Local Scale: orchard | vineyard

Medium: whole body | insect

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR23459780
8.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Intracellular_Parasites 1
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