SRR23454823 - Daphnia magna

Basic Information

Run: SRR23454823

Assay Type: AMPLICON

Biosample: SAMN33284884

Bytes: 22564136

Center Name: KU LEUVEN

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA934852

Geographic Information

Country: Belgium

Continent: Europe

Location Name: Belgium: Kortrijk

Latitude/Longitude: 50.807127 N 3.292826 E

Sample Information

Host: Daphnia magna

Isolation: -

Biosample Model: -

Collection Date: 2022-03-10

Host Sex: -

Environmental Information

Broad Scale: Daphnia magna microbiome

Local Scale: Hypoxia

Medium: Lab

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR23454823
21.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 75
Aerobic_Chemoheterotrophy 52
Fermentation 13
Methanol_Oxidation 8
Methylotrophy 8
Ureolysis 8
Nitrate_Reduction 7
Intracellular_Parasites 4
Nitrogen_Fixation 3
Nonphotosynthetic_Cyanobacteria 2
Photosynthetic_Cyanobacteria 2
Oxygenic_Photoautotrophy 2
Photoautotrophy 2
Phototrophy 2
Back to Amplicons List
Back to Table