SRR23454811 - Daphnia magna

Basic Information

Run: SRR23454811

Assay Type: AMPLICON

Biosample: SAMN33284866

Bytes: 39349338

Center Name: KU LEUVEN

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA934852

Geographic Information

Country: Belgium

Continent: Europe

Location Name: Belgium: Kortrijk

Latitude/Longitude: 50.807127 N 3.292808 E

Sample Information

Host: Daphnia magna

Isolation: -

Biosample Model: -

Collection Date: 2022-03-10

Host Sex: -

Environmental Information

Broad Scale: Daphnia magna microbiome

Local Scale: Hypoxia

Medium: Lab

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR23454811
37.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 92
Aerobic_Chemoheterotrophy 63
Fermentation 15
Methanol_Oxidation 13
Methylotrophy 13
Ureolysis 13
Nitrogen_Fixation 5
Intracellular_Parasites 5
Nitrate_Reduction 3
Nonphotosynthetic_Cyanobacteria 3
Photosynthetic_Cyanobacteria 3
Oxygenic_Photoautotrophy 3
Photoautotrophy 3
Phototrophy 3
Aromatic_Compound_Degradation 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Nitrite_Respiration 1
Human_Pathogens_All 1
Human_Associated 1
Animal_Parasites_Or_Symbionts 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
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