SRR23441011 - Svastra obliqua

Basic Information

Run: SRR23441011

Assay Type: AMPLICON

Biosample: SAMN33271217

Bytes: 14064016

Center Name: UNIVERSITY OF TEXAS AT AUSTIN

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA798723

Geographic Information

Country: USA

Continent: North America

Location Name: USA: TX, Austin

Latitude/Longitude: 30.284 N 97.778 W

Sample Information

Host: Svastra obliqua

Isolation: -

Biosample Model: -

Collection Date: 2018-06-05

Host Sex: -

Environmental Information

Broad Scale: not collected

Local Scale: flower

Medium: bee gut

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR23441011
13.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 22
Aerobic_Chemoheterotrophy 19
Human_Associated 4
Animal_Parasites_Or_Symbionts 4
Fermentation 3
Human_Pathogens_All 3
Nitrate_Reduction 3
Nitrogen_Fixation 2
Aromatic_Compound_Degradation 2
Nitrate_Respiration 2
Nitrogen_Respiration 2
Human_Gut 1
Mammal_Gut 1
Predatory_Or_Exoparasitic 1
Ureolysis 1
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