SRR23304960 - Spodoptera littoralis

Basic Information

Run: SRR23304960

Assay Type: AMPLICON

Biosample: SAMN32989808

Bytes: 22729639

Center Name: NATIONAL INSTITUTE OF ANIMAL BIOTECHNOLOGY (NIAB)

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA930181

Geographic Information

Country: Egypt

Continent: Africa

Location Name: Egypt

Latitude/Longitude: 31.2001 N 29.9187 E

Sample Information

Host: Spodoptera littoralis

Isolation: -

Biosample Model: -

Collection Date: 2008-09-19

Host Sex: -

Environmental Information

Broad Scale: Lepidopteran gut bacteriome

Local Scale: Noctuidae

Medium: Gut

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR23304960

21.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 26

Chemoheterotrophy

Aerobic_Chemoheterotrophy 21

Aerobic_Chemoheterotrophy

Nitrate_Respiration 4

Nitrate_Respiration

Nitrate_Reduction 4

Nitrate_Reduction

Nitrogen_Respiration 4

Nitrogen_Respiration

Ureolysis 4

Ureolysis

Methanol_Oxidation 3

Methanol_Oxidation

Methylotrophy 3

Methylotrophy

Nitrate_Denitrification 3

Nitrate_Denitrification

Nitrite_Denitrification 3

Nitrite_Denitrification

Denitrification 3

Denitrification

Nitrite_Respiration 3

Nitrite_Respiration

Fermentation 3

Fermentation

Human_Pathogens_All 2

Human_Pathogens_All

Human_Associated 2

Human_Associated

Animal_Parasites_Or_Symbionts 2

Animal_Parasites_Or_Symbionts

Aromatic_Compound_Degradation 2

Aromatic_Compound_Degradation

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 1

Nitrogen_Fixation

Xylanolysis 1

Xylanolysis

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

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