SRR23285896 - Aphis gossypii

Basic Information

Run: SRR23285896

Assay Type: AMPLICON

Biosample: SAMN32959361

Bytes: 9231808

Center Name: CHINA AGRICULTURAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA929464

Geographic Information

Country: China

Continent: Asia

Location Name: China:shanxi

Latitude/Longitude: 34.86 N 10.15 W

Sample Information

Host: Aphis gossypii

Isolation: -

Biosample Model: -

Collection Date: 2020-01-03

Host Sex: -

Environmental Information

Broad Scale: cotton biome

Local Scale: temperature

Medium: insect

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR23285896
8.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 20
Aerobic_Chemoheterotrophy 12
Fermentation 8
Human_Gut 5
Human_Associated 5
Mammal_Gut 5
Animal_Parasites_Or_Symbionts 5
Aerobic_Ammonia_Oxidation 1
Nitrification 1
Nitrogen_Fixation 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Nitrate_Reduction 1
Back to Amplicons List
Back to Table