SRR23285893 - Aphis gossypii

Basic Information

Run: SRR23285893

Assay Type: AMPLICON

Biosample: SAMN32959364

Bytes: 14999636

Center Name: CHINA AGRICULTURAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA929464

Geographic Information

Country: China

Continent: Asia

Location Name: China:xinjiang

Latitude/Longitude: 34.89 N 10.15 W

Sample Information

Host: Aphis gossypii

Isolation: -

Biosample Model: -

Collection Date: 2020-01-06

Host Sex: -

Environmental Information

Broad Scale: cotton biome

Local Scale: temperature

Medium: insect

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR23285893

14.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 55

Chemoheterotrophy

Aerobic_Chemoheterotrophy 27

Aerobic_Chemoheterotrophy

Fermentation 26

Fermentation

Human_Associated 12

Human_Associated

Animal_Parasites_Or_Symbionts 12

Animal_Parasites_Or_Symbionts

Human_Gut 11

Human_Gut

Mammal_Gut 11

Mammal_Gut

Phototrophy 7

Phototrophy

Nitrate_Reduction 6

Nitrate_Reduction

Photosynthetic_Cyanobacteria 6

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 6

Oxygenic_Photoautotrophy

Photoautotrophy 6

Photoautotrophy

Methanol_Oxidation 4

Methanol_Oxidation

Methylotrophy 4

Methylotrophy

Manganese_Oxidation 4

Manganese_Oxidation

Ureolysis 4

Ureolysis

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Methanogenesis_By_Co2_Reduction_With_H2 1

Methanogenesis_By_Co2_Reduction_With_H2

Hydrogenotrophic_Methanogenesis 1

Hydrogenotrophic_Methanogenesis

Methanogenesis 1

Methanogenesis

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Human_Pathogens_All 1

Human_Pathogens_All

Nitrate_Respiration 1

Nitrate_Respiration

Nitrogen_Respiration 1

Nitrogen_Respiration

Aerobic_Anoxygenic_Phototrophy 1

Aerobic_Anoxygenic_Phototrophy

Photoheterotrophy 1

Photoheterotrophy

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