SRR23285878 - Aphis gossypii

Basic Information

Run: SRR23285878

Assay Type: AMPLICON

Biosample: SAMN32959378

Bytes: 19773698

Center Name: CHINA AGRICULTURAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA929464

Geographic Information

Country: China

Continent: Asia

Location Name: China:shawan

Latitude/Longitude: 34.103 N 10.15 W

Sample Information

Host: Aphis gossypii

Isolation: -

Biosample Model: -

Collection Date: 2020-01-20

Host Sex: -

Environmental Information

Broad Scale: cotton biome

Local Scale: temperature

Medium: insect

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR23285878
18.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 37
Aerobic_Chemoheterotrophy 21
Fermentation 13
Nitrate_Reduction 7
Animal_Parasites_Or_Symbionts 5
Human_Associated 4
Ureolysis 4
Methanol_Oxidation 3
Methylotrophy 3
Human_Gut 3
Mammal_Gut 3
Nitrogen_Fixation 2
Sulfur_Respiration 1
Sulfite_Respiration 1
Respiration_Of_Sulfur_Compounds 1
Dark_Hydrogen_Oxidation 1
Nitrate_Ammonification 1
Nitrite_Ammonification 1
Nitrite_Respiration 1
Xylanolysis 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Human_Pathogens_All 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
Fumarate_Respiration 1
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