SRR23285877 - Aphis gossypii

Basic Information

Run: SRR23285877

Assay Type: AMPLICON

Biosample: SAMN32959343

Bytes: 14586785

Center Name: CHINA AGRICULTURAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA929464

Geographic Information

Country: China

Continent: Asia

Location Name: China:xinjiang

Latitude/Longitude: 34.68 N 10.15 W

Sample Information

Host: Aphis gossypii

Isolation: -

Biosample Model: -

Collection Date: 2020-01-05

Host Sex: -

Environmental Information

Broad Scale: cotton biome

Local Scale: temperature

Medium: insect

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR23285877

13.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 63

Chemoheterotrophy

Aerobic_Chemoheterotrophy 39

Aerobic_Chemoheterotrophy

Nitrate_Reduction 32

Nitrate_Reduction

Animal_Parasites_Or_Symbionts 21

Animal_Parasites_Or_Symbionts

Invertebrate_Parasites 16

Invertebrate_Parasites

Aromatic_Compound_Degradation 11

Aromatic_Compound_Degradation

Fermentation 9

Fermentation

Nitrate_Respiration 6

Nitrate_Respiration

Nitrogen_Respiration 6

Nitrogen_Respiration

Chitinolysis 5

Chitinolysis

Human_Associated 5

Human_Associated

Hydrocarbon_Degradation 5

Hydrocarbon_Degradation

Methylotrophy 4

Methylotrophy

Respiration_Of_Sulfur_Compounds 3

Respiration_Of_Sulfur_Compounds

Dark_Oxidation_Of_Sulfur_Compounds 3

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_All 3

Human_Pathogens_All

Aliphatic_Non_Methane_Hydrocarbon_Degradation 3

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Methanotrophy 2

Methanotrophy

Methanol_Oxidation 2

Methanol_Oxidation

Sulfate_Respiration 2

Sulfate_Respiration

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Nitrite_Respiration 2

Nitrite_Respiration

Dark_Thiosulfate_Oxidation 2

Dark_Thiosulfate_Oxidation

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Ureolysis 2

Ureolysis

Sulfur_Respiration 1

Sulfur_Respiration

Sulfite_Respiration 1

Sulfite_Respiration

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Xylanolysis 1

Xylanolysis

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Iron_Respiration 1

Iron_Respiration

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