SRR23285874 - Aphis gossypii

Basic Information

Run: SRR23285874

Assay Type: AMPLICON

Biosample: SAMN32959344

Bytes: 14150561

Center Name: CHINA AGRICULTURAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA929464

Geographic Information

Country: China

Continent: Asia

Location Name: China:shanxi

Latitude/Longitude: 34.69 N 10.15 W

Sample Information

Host: Aphis gossypii

Isolation: -

Biosample Model: -

Collection Date: 2020-01-06

Host Sex: -

Environmental Information

Broad Scale: cotton biome

Local Scale: temperature

Medium: insect

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR23285874

13.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 82

Chemoheterotrophy

Aerobic_Chemoheterotrophy 48

Aerobic_Chemoheterotrophy

Nitrate_Reduction 29

Nitrate_Reduction

Animal_Parasites_Or_Symbionts 26

Animal_Parasites_Or_Symbionts

Fermentation 22

Fermentation

Invertebrate_Parasites 15

Invertebrate_Parasites

Sulfate_Respiration 13

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 13

Respiration_Of_Sulfur_Compounds

Human_Associated 11

Human_Associated

Aromatic_Compound_Degradation 11

Aromatic_Compound_Degradation

Dark_Hydrogen_Oxidation 10

Dark_Hydrogen_Oxidation

Nitrate_Respiration 10

Nitrate_Respiration

Nitrogen_Respiration 10

Nitrogen_Respiration

Human_Pathogens_All 7

Human_Pathogens_All

Dark_Oxidation_Of_Sulfur_Compounds 6

Dark_Oxidation_Of_Sulfur_Compounds

Hydrocarbon_Degradation 6

Hydrocarbon_Degradation

Sulfite_Respiration 5

Sulfite_Respiration

Dark_Thiosulfate_Oxidation 5

Dark_Thiosulfate_Oxidation

Human_Gut 5

Human_Gut

Mammal_Gut 5

Mammal_Gut

Methylotrophy 3

Methylotrophy

Chitinolysis 3

Chitinolysis

Nitrogen_Fixation 3

Nitrogen_Fixation

Methanol_Oxidation 2

Methanol_Oxidation

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Nitrite_Respiration 2

Nitrite_Respiration

Human_Pathogens_Diarrhea 2

Human_Pathogens_Diarrhea

Aliphatic_Non_Methane_Hydrocarbon_Degradation 2

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Ureolysis 2

Ureolysis

Methanotrophy 1

Methanotrophy

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Xylanolysis 1

Xylanolysis

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Plant_Pathogen 1

Plant_Pathogen

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Photoheterotrophy 1

Photoheterotrophy

Phototrophy 1

Phototrophy

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