SRR23285873 - Aphis gossypii

Basic Information

Run: SRR23285873

Assay Type: AMPLICON

Biosample: SAMN32959345

Bytes: 13090392

Center Name: CHINA AGRICULTURAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA929464

Geographic Information

Country: China

Continent: Asia

Location Name: China:shanxi

Latitude/Longitude: 34.70 N 10.15 W

Sample Information

Host: Aphis gossypii

Isolation: -

Biosample Model: -

Collection Date: 2020-01-07

Host Sex: -

Environmental Information

Broad Scale: cotton biome

Local Scale: temperature

Medium: insect

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR23285873
12.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Nitrate_Reduction 25
Chemoheterotrophy 25
Aerobic_Chemoheterotrophy 20
Invertebrate_Parasites 17
Animal_Parasites_Or_Symbionts 17
Aromatic_Compound_Degradation 8
Aliphatic_Non_Methane_Hydrocarbon_Degradation 2
Hydrocarbon_Degradation 2
Methanol_Oxidation 1
Methylotrophy 1
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Chitinolysis 1
Nitrogen_Fixation 1
Nitrite_Respiration 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Fermentation 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
Ureolysis 1
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