SRR23285870 - Aphis gossypii

Basic Information

Run: SRR23285870

Assay Type: AMPLICON

Biosample: SAMN32959348

Bytes: 13792643

Center Name: CHINA AGRICULTURAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA929464

Geographic Information

Country: China

Continent: Asia

Location Name: China:shanxi

Latitude/Longitude: 34.73 N 10.15 W

Sample Information

Host: Aphis gossypii

Isolation: -

Biosample Model: -

Collection Date: 2020-01-10

Host Sex: -

Environmental Information

Broad Scale: cotton biome

Local Scale: temperature

Medium: insect

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR23285870

13.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 53

Chemoheterotrophy

Aerobic_Chemoheterotrophy 31

Aerobic_Chemoheterotrophy

Nitrate_Reduction 24

Nitrate_Reduction

Fermentation 15

Fermentation

Animal_Parasites_Or_Symbionts 15

Animal_Parasites_Or_Symbionts

Invertebrate_Parasites 13

Invertebrate_Parasites

Aromatic_Compound_Degradation 4

Aromatic_Compound_Degradation

Chitinolysis 3

Chitinolysis

Dark_Oxidation_Of_Sulfur_Compounds 3

Dark_Oxidation_Of_Sulfur_Compounds

Aliphatic_Non_Methane_Hydrocarbon_Degradation 3

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Hydrocarbon_Degradation 3

Hydrocarbon_Degradation

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Ureolysis 3

Ureolysis

Nitrogen_Fixation 2

Nitrogen_Fixation

Dark_Thiosulfate_Oxidation 2

Dark_Thiosulfate_Oxidation

Human_Gut 2

Human_Gut

Human_Associated 2

Human_Associated

Mammal_Gut 2

Mammal_Gut

Methanol_Oxidation 1

Methanol_Oxidation

Methylotrophy 1

Methylotrophy

Sulfate_Respiration 1

Sulfate_Respiration

Sulfite_Respiration 1

Sulfite_Respiration

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrite_Respiration 1

Nitrite_Respiration

Plant_Pathogen 1

Plant_Pathogen

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