SRR22988052 - Mayetiola hordei

Basic Information

Run: SRR22988052

Assay Type: AMPLICON

Biosample: SAMN32407803

Bytes: 180350538

Center Name: UNIVERSITY OF ABDELMALEK ESSAADI

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA915357

Geographic Information

Country: Morocco

Continent: Africa

Location Name: Morocco: Doukkala

Latitude/Longitude: 33.01083 N 8.29074 W

Sample Information

Host: Mayetiola hordei

Isolation: -

Biosample Model: -

Collection Date: 1905-07-12

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR22988052

172.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 162

Chemoheterotrophy

Aerobic_Chemoheterotrophy 100

Aerobic_Chemoheterotrophy

Fermentation 54

Fermentation

Nitrate_Reduction 28

Nitrate_Reduction

Animal_Parasites_Or_Symbionts 17

Animal_Parasites_Or_Symbionts

Nitrogen_Respiration 13

Nitrogen_Respiration

Human_Associated 12

Human_Associated

Nitrate_Respiration 12

Nitrate_Respiration

Human_Pathogens_All 11

Human_Pathogens_All

Ureolysis 11

Ureolysis

Aromatic_Compound_Degradation 10

Aromatic_Compound_Degradation

Nitrogen_Fixation 8

Nitrogen_Fixation

Methylotrophy 6

Methylotrophy

Methanol_Oxidation 4

Methanol_Oxidation

Nitrite_Respiration 4

Nitrite_Respiration

Hydrocarbon_Degradation 4

Hydrocarbon_Degradation

Nitrate_Denitrification 3

Nitrate_Denitrification

Nitrite_Denitrification 3

Nitrite_Denitrification

Denitrification 3

Denitrification

Intracellular_Parasites 3

Intracellular_Parasites

Predatory_Or_Exoparasitic 3

Predatory_Or_Exoparasitic

Nonphotosynthetic_Cyanobacteria 3

Nonphotosynthetic_Cyanobacteria

Phototrophy 3

Phototrophy

Methanotrophy 2

Methanotrophy

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Photoheterotrophy 2

Photoheterotrophy

Sulfate_Respiration 1

Sulfate_Respiration

Sulfite_Respiration 1

Sulfite_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Nitrite_Ammonification 1

Nitrite_Ammonification

Cellulolysis 1

Cellulolysis

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Manganese_Oxidation 1

Manganese_Oxidation

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Dark_Iron_Oxidation 1

Dark_Iron_Oxidation

Fumarate_Respiration 1

Fumarate_Respiration

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Back to Amplicons List

Back to Table