SRR22988051 - Mayetiola hordei

Basic Information

Run: SRR22988051

Assay Type: AMPLICON

Biosample: SAMN32407804

Bytes: 152930867

Center Name: UNIVERSITY OF ABDELMALEK ESSAADI

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA915357

Geographic Information

Country: Morocco

Continent: Africa

Location Name: Morocco: Abda

Latitude/Longitude: 32.16898 N 8.55100 W

Sample Information

Host: Mayetiola hordei

Isolation: -

Biosample Model: -

Collection Date: 1905-07-12

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR22988051

145.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 86

Chemoheterotrophy

Aerobic_Chemoheterotrophy 66

Aerobic_Chemoheterotrophy

Nitrate_Reduction 21

Nitrate_Reduction

Fermentation 20

Fermentation

Animal_Parasites_Or_Symbionts 11

Animal_Parasites_Or_Symbionts

Nitrate_Respiration 10

Nitrate_Respiration

Nitrogen_Respiration 10

Nitrogen_Respiration

Ureolysis 8

Ureolysis

Human_Pathogens_All 7

Human_Pathogens_All

Human_Associated 7

Human_Associated

Aromatic_Compound_Degradation 5

Aromatic_Compound_Degradation

Nonphotosynthetic_Cyanobacteria 4

Nonphotosynthetic_Cyanobacteria

Methanol_Oxidation 3

Methanol_Oxidation

Methylotrophy 3

Methylotrophy

Dark_Hydrogen_Oxidation 3

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 3

Nitrogen_Fixation

Predatory_Or_Exoparasitic 3

Predatory_Or_Exoparasitic

Methanogenesis_By_Co2_Reduction_With_H2 2

Methanogenesis_By_Co2_Reduction_With_H2

Hydrogenotrophic_Methanogenesis 2

Hydrogenotrophic_Methanogenesis

Methanogenesis 2

Methanogenesis

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Nitrite_Respiration 2

Nitrite_Respiration

Intracellular_Parasites 2

Intracellular_Parasites

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Dark_Iron_Oxidation 1

Dark_Iron_Oxidation

Iron_Respiration 1

Iron_Respiration

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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