SRR22988049 - Mayetiola hordei

Basic Information

Run: SRR22988049

Assay Type: AMPLICON

Biosample: SAMN32407806

Bytes: 169100751

Center Name: UNIVERSITY OF ABDELMALEK ESSAADI

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA915357

Geographic Information

Country: Morocco

Continent: Africa

Location Name: Morocco: Fes Meknes

Latitude/Longitude: 33.58706 N 5.35273 W

Sample Information

Host: Mayetiola hordei

Isolation: -

Biosample Model: -

Collection Date: 1905-07-12

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR22988049

161.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 113

Chemoheterotrophy

Aerobic_Chemoheterotrophy 77

Aerobic_Chemoheterotrophy

Fermentation 31

Fermentation

Nitrate_Reduction 17

Nitrate_Reduction

Animal_Parasites_Or_Symbionts 14

Animal_Parasites_Or_Symbionts

Aromatic_Compound_Degradation 12

Aromatic_Compound_Degradation

Human_Pathogens_All 11

Human_Pathogens_All

Human_Associated 11

Human_Associated

Nitrate_Respiration 9

Nitrate_Respiration

Nitrogen_Respiration 9

Nitrogen_Respiration

Ureolysis 6

Ureolysis

Methanol_Oxidation 4

Methanol_Oxidation

Methylotrophy 4

Methylotrophy

Photosynthetic_Cyanobacteria 3

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 3

Oxygenic_Photoautotrophy

Photoautotrophy 3

Photoautotrophy

Phototrophy 3

Phototrophy

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 2

Nitrogen_Fixation

Nitrite_Respiration 2

Nitrite_Respiration

Aromatic_Hydrocarbon_Degradation 2

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Predatory_Or_Exoparasitic 2

Predatory_Or_Exoparasitic

Nonphotosynthetic_Cyanobacteria 2

Nonphotosynthetic_Cyanobacteria

Arsenate_Detoxification 1

Arsenate_Detoxification

Dissimilatory_Arsenate_Reduction 1

Dissimilatory_Arsenate_Reduction

Plant_Pathogen 1

Plant_Pathogen

Fumarate_Respiration 1

Fumarate_Respiration

Intracellular_Parasites 1

Intracellular_Parasites

Plastic_Degradation 1

Plastic_Degradation

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