SRR22938648 - Salmo salar

Basic Information

Run: SRR22938648

Assay Type: AMPLICON

Biosample: SAMN32513456

Bytes: 30495202

Center Name: HARBOR BRANCH OCEANOGRAPHIC INSTITUTE AT FLORIDA ATLANTIC UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA916945

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Maine, Orono

Latitude/Longitude: 44.900490 N 68.685020 W

Sample Information

Host: Salmo salar

Isolation: -

Biosample Model: -

Collection Date: 2021-03-30

Host Sex: -

Environmental Information

Broad Scale: animal aquaculture process

Local Scale: finfish farming process

Medium: gut contents

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22938648
29.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 86
Aerobic_Chemoheterotrophy 47
Fermentation 38
Nitrate_Reduction 19
Human_Pathogens_All 16
Human_Associated 16
Animal_Parasites_Or_Symbionts 16
Human_Gut 11
Mammal_Gut 11
Ureolysis 10
Aromatic_Compound_Degradation 8
Nitrate_Respiration 4
Nitrogen_Respiration 4
Arsenate_Detoxification 3
Dissimilatory_Arsenate_Reduction 3
Nitrate_Denitrification 3
Nitrite_Denitrification 3
Denitrification 3
Nitrite_Respiration 3
Methanol_Oxidation 2
Methylotrophy 2
Dark_Hydrogen_Oxidation 2
Human_Pathogens_Septicemia 2
Human_Pathogens_Pneumonia 2
Nitrogen_Fixation 1
Xylanolysis 1
Dark_Thiosulfate_Oxidation 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Ligninolysis 1
Plant_Pathogen 1
Aromatic_Hydrocarbon_Degradation 1
Hydrocarbon_Degradation 1
Predatory_Or_Exoparasitic 1
Plastic_Degradation 1
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