SRR22888929 - Xylocopa caerulea

Basic Information

Run: SRR22888929

Assay Type: AMPLICON

Biosample: SAMN32395915

Bytes: 13895607

Center Name: CHINESE ACADEMY OF TROPICAL AGRICULTURAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA915489

Geographic Information

Country: China

Continent: Asia

Location Name: China:hainan

Latitude/Longitude: missing

Sample Information

Host: Xylocopa caerulea

Isolation: -

Biosample Model: -

Collection Date: 2022-04-04

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22888929
13.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 42
Fermentation 25
Aerobic_Chemoheterotrophy 15
Human_Associated 6
Animal_Parasites_Or_Symbionts 6
Aromatic_Compound_Degradation 6
Nitrate_Reduction 6
Human_Gut 5
Mammal_Gut 5
Ureolysis 3
Methanol_Oxidation 2
Methylotrophy 2
Hydrocarbon_Degradation 2
Nitrate_Respiration 2
Nitrogen_Respiration 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Nitrogen_Fixation 1
Nitrite_Respiration 1
Human_Pathogens_All 1
Aromatic_Hydrocarbon_Degradation 1
Back to Amplicons List
Back to Table