SRR22566708 - Strauzia vittigera

Basic Information

Run: SRR22566708

Assay Type: AMPLICON

Biosample: SAMN32096220

Bytes: 14497835

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.653341 N 91.47998 W

Sample Information

Host: Strauzia vittigera

Isolation: -

Biosample Model: -

Collection Date: 2015-01-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566708
13.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 49
Fermentation 38
Nitrate_Reduction 38
Nitrate_Ammonification 37
Nitrite_Ammonification 37
Nitrite_Respiration 37
Human_Pathogens_All 37
Human_Gut 37
Human_Associated 37
Mammal_Gut 37
Animal_Parasites_Or_Symbionts 37
Nitrate_Respiration 37
Nitrogen_Respiration 37
Intracellular_Parasites 12
Aerobic_Chemoheterotrophy 11
Back to Amplicons List
Back to Table