SRR22566706 - Condylostylus patibulatus

Basic Information

Run: SRR22566706

Assay Type: AMPLICON

Biosample: SAMN32096230

Bytes: 11534248

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Condylostylus patibulatus

Isolation: -

Biosample Model: -

Collection Date: 2020-06-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566706
11.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 258
Nitrate_Reduction 162
Fermentation 159
Animal_Parasites_Or_Symbionts 154
Human_Associated 153
Human_Pathogens_All 150
Nitrate_Respiration 150
Nitrogen_Respiration 150
Human_Gut 149
Mammal_Gut 149
Nitrite_Respiration 148
Nitrate_Ammonification 146
Nitrite_Ammonification 146
Aerobic_Chemoheterotrophy 96
Intracellular_Parasites 37
Methanol_Oxidation 6
Methylotrophy 6
Nitrogen_Fixation 6
Plant_Pathogen 6
Ureolysis 6
Aromatic_Compound_Degradation 3
Nitrate_Denitrification 2
Nitrite_Denitrification 2
Denitrification 2
Dark_Hydrogen_Oxidation 2
Invertebrate_Parasites 1
Human_Pathogens_Septicemia 1
Human_Pathogens_Pneumonia 1
Predatory_Or_Exoparasitic 1
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