SRR22566704 - Strauzia intermedia

Basic Information

Run: SRR22566704

Assay Type: AMPLICON

Biosample: SAMN32096324

Bytes: 30343386

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Quality Control Information

Filter Percentage: 1.0

QC Average Length: -

Retained Reads: 0

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Decorah

Latitude/Longitude: 43.30119 N 91.79077 W

Sample Information

Host: Strauzia intermedia

Isolation: -

Biosample Model: -

Collection Date: 2014-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566704
28.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 69
Aerobic_Chemoheterotrophy 56
Intracellular_Parasites 26
Human_Associated 14
Animal_Parasites_Or_Symbionts 14
Fermentation 13
Human_Pathogens_All 13
Nitrate_Reduction 13
Nitrate_Respiration 12
Nitrogen_Respiration 12
Human_Gut 10
Mammal_Gut 10
Nitrate_Ammonification 9
Nitrite_Ammonification 9
Nitrite_Respiration 9
Aromatic_Compound_Degradation 1
Nonphotosynthetic_Cyanobacteria 1
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