SRR22566702 - Strauzia intermedia

Basic Information

Run: SRR22566702

Assay Type: AMPLICON

Biosample: SAMN32096322

Bytes: 29649772

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Decorah

Latitude/Longitude: 43.30119 N 91.79077 W

Sample Information

Host: Strauzia intermedia

Isolation: -

Biosample Model: -

Collection Date: 2014-01-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566702
28.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 49
Aerobic_Chemoheterotrophy 30
Fermentation 19
Intracellular_Parasites 18
Nitrate_Reduction 14
Human_Pathogens_All 13
Human_Associated 13
Animal_Parasites_Or_Symbionts 13
Nitrate_Ammonification 12
Nitrite_Ammonification 12
Nitrite_Respiration 12
Human_Gut 12
Mammal_Gut 12
Nitrate_Respiration 12
Nitrogen_Respiration 12
Aromatic_Compound_Degradation 4
Plant_Pathogen 1
Ureolysis 1
Back to Amplicons List
Back to Table