SRR22566696 - Strauzia vittigera

Basic Information

Run: SRR22566696

Assay Type: AMPLICON

Biosample: SAMN32096331

Bytes: 15031504

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.653341 N 91.47998 W

Sample Information

Host: Strauzia vittigera

Isolation: -

Biosample Model: -

Collection Date: 2015-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR22566696

14.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 150

Chemoheterotrophy

Fermentation 91

Fermentation

Nitrate_Reduction 83

Nitrate_Reduction

Human_Associated 74

Human_Associated

Animal_Parasites_Or_Symbionts 74

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 73

Human_Pathogens_All

Nitrite_Respiration 71

Nitrite_Respiration

Nitrate_Respiration 71

Nitrate_Respiration

Nitrogen_Respiration 71

Nitrogen_Respiration

Human_Gut 70

Human_Gut

Mammal_Gut 70

Mammal_Gut

Nitrate_Ammonification 69

Nitrate_Ammonification

Nitrite_Ammonification 69

Nitrite_Ammonification

Aerobic_Chemoheterotrophy 55

Aerobic_Chemoheterotrophy

Intracellular_Parasites 28

Intracellular_Parasites

Nitrogen_Fixation 6

Nitrogen_Fixation

Ureolysis 6

Ureolysis

Methanol_Oxidation 5

Methanol_Oxidation

Methylotrophy 5

Methylotrophy

Plant_Pathogen 4

Plant_Pathogen

Aromatic_Compound_Degradation 3

Aromatic_Compound_Degradation

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Xylanolysis 1

Xylanolysis

Ligninolysis 1

Ligninolysis

Invertebrate_Parasites 1

Invertebrate_Parasites

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 1

Human_Pathogens_Pneumonia

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Plastic_Degradation 1

Plastic_Degradation

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