SRR22566680 - Toxomerus marginatus

Basic Information

Run: SRR22566680

Assay Type: AMPLICON

Biosample: SAMN32096249

Bytes: 10964873

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Quality Control Information

Filter Percentage: 1.0

QC Average Length: -

Retained Reads: 0

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Toxomerus marginatus

Isolation: -

Biosample Model: -

Collection Date: 2020-06-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566680
10.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 82
Fermentation 69
Human_Pathogens_All 58
Human_Associated 58
Animal_Parasites_Or_Symbionts 58
Nitrate_Reduction 58
Nitrate_Ammonification 57
Nitrite_Ammonification 57
Nitrite_Respiration 57
Human_Gut 57
Mammal_Gut 57
Nitrate_Respiration 57
Nitrogen_Respiration 57
Aerobic_Chemoheterotrophy 13
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