SRR22566674 - Toxomerus marginatus

Basic Information

Run: SRR22566674

Assay Type: AMPLICON

Biosample: SAMN32096254

Bytes: 3238646

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Toxomerus marginatus

Isolation: -

Biosample Model: -

Collection Date: 2020-06-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566674
3.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 56
Fermentation 33
Nitrate_Reduction 33
Animal_Parasites_Or_Symbionts 28
Human_Associated 27
Human_Pathogens_All 26
Aerobic_Chemoheterotrophy 25
Nitrate_Respiration 25
Nitrogen_Respiration 25
Nitrite_Respiration 24
Human_Gut 24
Mammal_Gut 24
Nitrate_Ammonification 23
Nitrite_Ammonification 23
Intracellular_Parasites 14
Nitrogen_Fixation 2
Plant_Pathogen 2
Aromatic_Compound_Degradation 2
Ureolysis 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Invertebrate_Parasites 1
Human_Pathogens_Septicemia 1
Human_Pathogens_Pneumonia 1
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