SRR22566670 - Toxomerus marginatus

Basic Information

Run: SRR22566670

Assay Type: AMPLICON

Biosample: SAMN32096258

Bytes: 22640708

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Toxomerus marginatus

Isolation: -

Biosample Model: -

Collection Date: 2020-06-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR22566670

21.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 298

Chemoheterotrophy

Aerobic_Chemoheterotrophy 158

Aerobic_Chemoheterotrophy

Fermentation 126

Fermentation

Nitrate_Reduction 111

Nitrate_Reduction

Animal_Parasites_Or_Symbionts 106

Animal_Parasites_Or_Symbionts

Human_Associated 104

Human_Associated

Human_Pathogens_All 103

Human_Pathogens_All

Nitrate_Respiration 100

Nitrate_Respiration

Nitrogen_Respiration 100

Nitrogen_Respiration

Human_Gut 98

Human_Gut

Mammal_Gut 98

Mammal_Gut

Nitrate_Ammonification 97

Nitrate_Ammonification

Nitrite_Ammonification 97

Nitrite_Ammonification

Nitrite_Respiration 97

Nitrite_Respiration

Intracellular_Parasites 29

Intracellular_Parasites

Ureolysis 18

Ureolysis

Nitrogen_Fixation 16

Nitrogen_Fixation

Aromatic_Compound_Degradation 13

Aromatic_Compound_Degradation

Methylotrophy 5

Methylotrophy

Methanol_Oxidation 4

Methanol_Oxidation

Chitinolysis 3

Chitinolysis

Cellulolysis 3

Cellulolysis

Plant_Pathogen 3

Plant_Pathogen

Invertebrate_Parasites 2

Invertebrate_Parasites

Nonphotosynthetic_Cyanobacteria 2

Nonphotosynthetic_Cyanobacteria

Methanotrophy 1

Methanotrophy

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 1

Human_Pathogens_Pneumonia

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

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