SRR22566665 - Strauzia vittigera

Basic Information

Run: SRR22566665

Assay Type: AMPLICON

Biosample: SAMN32096228

Bytes: 11164717

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Quality Control Information

Filter Percentage: 1.0

QC Average Length: -

Retained Reads: 0

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Strauzia vittigera

Isolation: -

Biosample Model: -

Collection Date: 2020-06-16

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR22566665

10.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 153

Chemoheterotrophy

Aerobic_Chemoheterotrophy 104

Aerobic_Chemoheterotrophy

Fermentation 46

Fermentation

Human_Associated 44

Human_Associated

Nitrate_Reduction 44

Nitrate_Reduction

Animal_Parasites_Or_Symbionts 43

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 41

Human_Pathogens_All

Nitrate_Respiration 36

Nitrate_Respiration

Nitrogen_Respiration 36

Nitrogen_Respiration

Human_Gut 33

Human_Gut

Mammal_Gut 33

Mammal_Gut

Nitrate_Ammonification 30

Nitrate_Ammonification

Nitrite_Ammonification 30

Nitrite_Ammonification

Nitrite_Respiration 30

Nitrite_Respiration

Aromatic_Compound_Degradation 27

Aromatic_Compound_Degradation

Intracellular_Parasites 15

Intracellular_Parasites

Plant_Pathogen 7

Plant_Pathogen

Ureolysis 7

Ureolysis

Chitinolysis 4

Chitinolysis

Nitrogen_Fixation 4

Nitrogen_Fixation

Human_Pathogens_Septicemia 3

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 2

Human_Pathogens_Pneumonia

Photosynthetic_Cyanobacteria 2

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 2

Oxygenic_Photoautotrophy

Photoautotrophy 2

Photoautotrophy

Phototrophy 2

Phototrophy

Methanol_Oxidation 1

Methanol_Oxidation

Methylotrophy 1

Methylotrophy

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Meningitis 1

Human_Pathogens_Meningitis

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