SRR22566657 - Nomada pygmaea

Basic Information

Run: SRR22566657

Assay Type: AMPLICON

Biosample: SAMN32096307

Bytes: 18287543

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Nomada pygmaea

Isolation: -

Biosample Model: -

Collection Date: 2021-05-26

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR22566657

17.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 104

Chemoheterotrophy

Fermentation 60

Fermentation

Aerobic_Chemoheterotrophy 41

Aerobic_Chemoheterotrophy

Animal_Parasites_Or_Symbionts 30

Animal_Parasites_Or_Symbionts

Human_Associated 29

Human_Associated

Human_Gut 23

Human_Gut

Mammal_Gut 23

Mammal_Gut

Nitrate_Reduction 20

Nitrate_Reduction

Human_Pathogens_All 12

Human_Pathogens_All

Ureolysis 11

Ureolysis

Intracellular_Parasites 9

Intracellular_Parasites

Nitrate_Respiration 8

Nitrate_Respiration

Nitrogen_Respiration 8

Nitrogen_Respiration

Nitrate_Ammonification 7

Nitrate_Ammonification

Nitrite_Ammonification 7

Nitrite_Ammonification

Nitrite_Respiration 7

Nitrite_Respiration

Aromatic_Compound_Degradation 6

Aromatic_Compound_Degradation

Methylotrophy 4

Methylotrophy

Methanol_Oxidation 3

Methanol_Oxidation

Sulfite_Respiration 2

Sulfite_Respiration

Respiration_Of_Sulfur_Compounds 2

Respiration_Of_Sulfur_Compounds

Xylanolysis 2

Xylanolysis

Ligninolysis 2

Ligninolysis

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Methanotrophy 1

Methanotrophy

Nitrogen_Fixation 1

Nitrogen_Fixation

Invertebrate_Parasites 1

Invertebrate_Parasites

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 1

Human_Pathogens_Pneumonia

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

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