SRR22566654 - Tipula bicolor

Basic Information

Run: SRR22566654

Assay Type: AMPLICON

Biosample: SAMN32096310

Bytes: 15833587

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Tipula bicolor

Isolation: -

Biosample Model: -

Collection Date: 2021-05-26

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR22566654

15.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 261

Chemoheterotrophy

Aerobic_Chemoheterotrophy 185

Aerobic_Chemoheterotrophy

Fermentation 54

Fermentation

Nitrate_Reduction 39

Nitrate_Reduction

Aromatic_Compound_Degradation 35

Aromatic_Compound_Degradation

Ureolysis 30

Ureolysis

Animal_Parasites_Or_Symbionts 27

Animal_Parasites_Or_Symbionts

Methanol_Oxidation 24

Methanol_Oxidation

Methylotrophy 24

Methylotrophy

Human_Associated 23

Human_Associated

Human_Pathogens_All 19

Human_Pathogens_All

Nitrate_Respiration 14

Nitrate_Respiration

Nitrogen_Respiration 14

Nitrogen_Respiration

Human_Gut 12

Human_Gut

Mammal_Gut 12

Mammal_Gut

Intracellular_Parasites 11

Intracellular_Parasites

Nitrite_Respiration 9

Nitrite_Respiration

Nitrate_Ammonification 8

Nitrate_Ammonification

Nitrite_Ammonification 8

Nitrite_Ammonification

Nitrogen_Fixation 6

Nitrogen_Fixation

Photosynthetic_Cyanobacteria 5

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 5

Oxygenic_Photoautotrophy

Photoautotrophy 5

Photoautotrophy

Phototrophy 5

Phototrophy

Plant_Pathogen 4

Plant_Pathogen

Predatory_Or_Exoparasitic 4

Predatory_Or_Exoparasitic

Nonphotosynthetic_Cyanobacteria 4

Nonphotosynthetic_Cyanobacteria

Dark_Oxidation_Of_Sulfur_Compounds 3

Dark_Oxidation_Of_Sulfur_Compounds

Ligninolysis 3

Ligninolysis

Human_Pathogens_Septicemia 3

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 3

Human_Pathogens_Pneumonia

Aliphatic_Non_Methane_Hydrocarbon_Degradation 2

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Cellulolysis 1

Cellulolysis

Xylanolysis 1

Xylanolysis

Invertebrate_Parasites 1

Invertebrate_Parasites

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