SRR22566653 - Pseudomalus auratus

Basic Information

Run: SRR22566653

Assay Type: AMPLICON

Biosample: SAMN32096311

Bytes: 13045900

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Pseudomalus auratus

Isolation: -

Biosample Model: -

Collection Date: 2021-05-26

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR22566653

12.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 176

Chemoheterotrophy

Aerobic_Chemoheterotrophy 132

Aerobic_Chemoheterotrophy

Fermentation 45

Fermentation

Animal_Parasites_Or_Symbionts 44

Animal_Parasites_Or_Symbionts

Nitrate_Reduction 42

Nitrate_Reduction

Human_Associated 29

Human_Associated

Ureolysis 28

Ureolysis

Human_Pathogens_All 26

Human_Pathogens_All

Nitrate_Respiration 16

Nitrate_Respiration

Nitrogen_Respiration 16

Nitrogen_Respiration

Methanol_Oxidation 11

Methanol_Oxidation

Methylotrophy 11

Methylotrophy

Aromatic_Compound_Degradation 11

Aromatic_Compound_Degradation

Intracellular_Parasites 11

Intracellular_Parasites

Nitrite_Respiration 8

Nitrite_Respiration

Human_Gut 8

Human_Gut

Mammal_Gut 8

Mammal_Gut

Nitrogen_Fixation 7

Nitrogen_Fixation

Dark_Oxidation_Of_Sulfur_Compounds 7

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Septicemia 7

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 7

Human_Pathogens_Pneumonia

Nitrate_Ammonification 5

Nitrate_Ammonification

Nitrite_Ammonification 5

Nitrite_Ammonification

Ligninolysis 3

Ligninolysis

Invertebrate_Parasites 3

Invertebrate_Parasites

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Predatory_Or_Exoparasitic 2

Predatory_Or_Exoparasitic

Plastic_Degradation 1

Plastic_Degradation

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