SRR22566641 - Strauzia (either S. vittigera or S. longitudinalis)

Basic Information

Run: SRR22566641

Assay Type: AMPLICON

Biosample: SAMN32096340

Bytes: 14394129

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.653341 N 91.47998 W

Sample Information

Host: Strauzia (either S. vittigera or S. longitudinalis)

Isolation: -

Biosample Model: -

Collection Date: 2015-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566641
13.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 182
Fermentation 124
Human_Pathogens_All 122
Human_Associated 122
Animal_Parasites_Or_Symbionts 122
Nitrate_Respiration 119
Nitrate_Reduction 119
Nitrogen_Respiration 119
Nitrite_Respiration 118
Nitrate_Ammonification 116
Nitrite_Ammonification 116
Human_Gut 116
Mammal_Gut 116
Aerobic_Chemoheterotrophy 58
Aromatic_Compound_Degradation 28
Intracellular_Parasites 8
Methanol_Oxidation 2
Methylotrophy 2
Nitrate_Denitrification 2
Nitrite_Denitrification 2
Denitrification 2
Dark_Hydrogen_Oxidation 2
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