SRR22566637 - Strauzia vittigera

Basic Information

Run: SRR22566637

Assay Type: AMPLICON

Biosample: SAMN32096343

Bytes: 13565644

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Honey Creek

Latitude/Longitude: 41.421579 N 95.854282 W

Sample Information

Host: Strauzia vittigera

Isolation: -

Biosample Model: -

Collection Date: 2014-01-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566637
12.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 63
Nitrite_Respiration 36
Fermentation 36
Animal_Parasites_Or_Symbionts 36
Nitrate_Respiration 36
Nitrate_Reduction 36
Nitrogen_Respiration 36
Nitrate_Ammonification 35
Nitrite_Ammonification 35
Human_Pathogens_All 35
Human_Gut 35
Human_Associated 35
Mammal_Gut 35
Aerobic_Chemoheterotrophy 27
Intracellular_Parasites 4
Plant_Pathogen 2
Invertebrate_Parasites 1
Plastic_Degradation 1
Back to Amplicons List
Back to Table