SRR22566633 - Strauzia vittigera

Basic Information

Run: SRR22566633

Assay Type: AMPLICON

Biosample: SAMN32096348

Bytes: 19979183

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Quality Control Information

Filter Percentage: 1.0

QC Average Length: -

Retained Reads: 0

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.653341 N 91.47998 W

Sample Information

Host: Strauzia vittigera

Isolation: -

Biosample Model: -

Collection Date: 2015-01-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566633
19.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 181
Fermentation 92
Aerobic_Chemoheterotrophy 89
Nitrate_Reduction 89
Human_Pathogens_All 86
Human_Associated 86
Animal_Parasites_Or_Symbionts 86
Nitrate_Respiration 85
Nitrogen_Respiration 85
Nitrate_Ammonification 84
Nitrite_Ammonification 84
Nitrite_Respiration 84
Human_Gut 84
Mammal_Gut 84
Intracellular_Parasites 39
Aromatic_Compound_Degradation 3
Plant_Pathogen 2
Ureolysis 1
Back to Amplicons List
Back to Table