SRR22566620 - Toxomerus marginatus

Basic Information

Run: SRR22566620

Assay Type: AMPLICON

Biosample: SAMN32096265

Bytes: 21859352

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Toxomerus marginatus

Isolation: -

Biosample Model: -

Collection Date: 2020-06-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566620
20.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 207
Fermentation 144
Nitrate_Reduction 144
Animal_Parasites_Or_Symbionts 130
Human_Pathogens_All 128
Human_Associated 128
Nitrate_Respiration 126
Nitrogen_Respiration 126
Nitrate_Ammonification 125
Nitrite_Ammonification 125
Nitrite_Respiration 125
Human_Gut 125
Mammal_Gut 125
Aerobic_Chemoheterotrophy 56
Intracellular_Parasites 21
Nitrogen_Fixation 7
Methylotrophy 6
Methanol_Oxidation 5
Plant_Pathogen 4
Aromatic_Compound_Degradation 4
Invertebrate_Parasites 2
Methanotrophy 1
Human_Pathogens_Septicemia 1
Human_Pathogens_Pneumonia 1
Oil_Bioremediation 1
Hydrocarbon_Degradation 1
Ureolysis 1
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