SRR22566617 - Ochlerotatus trivittatus

Basic Information

Run: SRR22566617

Assay Type: AMPLICON

Biosample: SAMN32096268

Bytes: 21626958

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Ochlerotatus trivittatus

Isolation: -

Biosample Model: -

Collection Date: 2020-06-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566617
20.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 298
Aerobic_Chemoheterotrophy 169
Fermentation 127
Nitrate_Reduction 125
Animal_Parasites_Or_Symbionts 122
Human_Associated 115
Human_Pathogens_All 113
Nitrate_Respiration 105
Nitrogen_Respiration 105
Nitrite_Respiration 103
Human_Gut 101
Mammal_Gut 101
Nitrate_Ammonification 99
Nitrite_Ammonification 99
Intracellular_Parasites 36
Aromatic_Compound_Degradation 32
Ureolysis 11
Nitrogen_Fixation 6
Nitrate_Denitrification 4
Nitrite_Denitrification 4
Denitrification 4
Human_Pathogens_Septicemia 3
Human_Pathogens_Pneumonia 3
Plant_Pathogen 3
Methanol_Oxidation 2
Methylotrophy 2
Invertebrate_Parasites 2
Photoheterotrophy 2
Phototrophy 2
Arsenate_Detoxification 1
Dissimilatory_Arsenate_Reduction 1
Chitinolysis 1
Ligninolysis 1
Aliphatic_Non_Methane_Hydrocarbon_Degradation 1
Hydrocarbon_Degradation 1
Predatory_Or_Exoparasitic 1
Nonphotosynthetic_Cyanobacteria 1
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