SRR22566616 - Tutelina similis

Basic Information

Run: SRR22566616

Assay Type: AMPLICON

Biosample: SAMN32096269

Bytes: 3793136

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Tutelina similis

Isolation: -

Biosample Model: -

Collection Date: 2020-06-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR22566616

3.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 157

Chemoheterotrophy

Fermentation 95

Fermentation

Nitrate_Reduction 88

Nitrate_Reduction

Animal_Parasites_Or_Symbionts 87

Animal_Parasites_Or_Symbionts

Human_Associated 85

Human_Associated

Human_Pathogens_All 84

Human_Pathogens_All

Nitrate_Respiration 78

Nitrate_Respiration

Nitrogen_Respiration 78

Nitrogen_Respiration

Human_Gut 73

Human_Gut

Mammal_Gut 73

Mammal_Gut

Nitrite_Respiration 72

Nitrite_Respiration

Nitrate_Ammonification 71

Nitrate_Ammonification

Nitrite_Ammonification 71

Nitrite_Ammonification

Aerobic_Chemoheterotrophy 59

Aerobic_Chemoheterotrophy

Intracellular_Parasites 26

Intracellular_Parasites

Aromatic_Compound_Degradation 8

Aromatic_Compound_Degradation

Methanol_Oxidation 5

Methanol_Oxidation

Methylotrophy 5

Methylotrophy

Nitrogen_Fixation 5

Nitrogen_Fixation

Ureolysis 5

Ureolysis

Plant_Pathogen 3

Plant_Pathogen

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Human_Pathogens_Septicemia 2

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 2

Human_Pathogens_Pneumonia

Sulfur_Respiration 1

Sulfur_Respiration

Sulfite_Respiration 1

Sulfite_Respiration

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Arsenate_Respiration 1

Arsenate_Respiration

Dissimilatory_Arsenate_Reduction 1

Dissimilatory_Arsenate_Reduction

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Ligninolysis 1

Ligninolysis

Invertebrate_Parasites 1

Invertebrate_Parasites

Fumarate_Respiration 1

Fumarate_Respiration

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