SRR22566614 - Geina sheppardi

Basic Information

Run: SRR22566614

Assay Type: AMPLICON

Biosample: SAMN32096270

Bytes: 20808685

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Geina sheppardi

Isolation: -

Biosample Model: -

Collection Date: 2020-06-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566614
19.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 75
Fermentation 67
Nitrate_Reduction 27
Human_Associated 25
Animal_Parasites_Or_Symbionts 25
Human_Pathogens_All 24
Human_Gut 23
Mammal_Gut 23
Nitrate_Ammonification 22
Nitrite_Ammonification 22
Nitrite_Respiration 22
Nitrate_Respiration 22
Nitrogen_Respiration 22
Aerobic_Chemoheterotrophy 8
Intracellular_Parasites 6
Nitrogen_Fixation 3
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