SRR22566612 - Condylostylus patibulatus

Basic Information

Run: SRR22566612

Assay Type: AMPLICON

Biosample: SAMN32096272

Bytes: 13585557

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Condylostylus patibulatus

Isolation: -

Biosample Model: -

Collection Date: 2020-06-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566612
13.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 230
Nitrate_Reduction 129
Fermentation 125
Animal_Parasites_Or_Symbionts 119
Human_Associated 118
Human_Pathogens_All 117
Nitrate_Respiration 111
Nitrogen_Respiration 111
Nitrite_Respiration 108
Human_Gut 106
Mammal_Gut 106
Nitrate_Ammonification 103
Nitrite_Ammonification 103
Aerobic_Chemoheterotrophy 98
Intracellular_Parasites 33
Ureolysis 15
Methanol_Oxidation 11
Methylotrophy 11
Plant_Pathogen 7
Aromatic_Compound_Degradation 7
Nitrate_Denitrification 5
Nitrite_Denitrification 5
Denitrification 5
Dark_Hydrogen_Oxidation 5
Ligninolysis 5
Photosynthetic_Cyanobacteria 5
Oxygenic_Photoautotrophy 5
Photoautotrophy 5
Phototrophy 5
Nitrogen_Fixation 3
Human_Pathogens_Septicemia 3
Human_Pathogens_Pneumonia 3
Arsenate_Detoxification 1
Dissimilatory_Arsenate_Reduction 1
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