SRR22566610 - Condylostylus patibulatus

Basic Information

Run: SRR22566610

Assay Type: AMPLICON

Biosample: SAMN32096274

Bytes: 16455476

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Condylostylus patibulatus

Isolation: -

Biosample Model: -

Collection Date: 2020-06-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566610
15.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 160
Nitrate_Reduction 104
Fermentation 103
Animal_Parasites_Or_Symbionts 91
Human_Pathogens_All 89
Human_Associated 89
Nitrate_Respiration 88
Nitrogen_Respiration 88
Nitrite_Respiration 84
Human_Gut 84
Mammal_Gut 84
Nitrate_Ammonification 83
Nitrite_Ammonification 83
Aerobic_Chemoheterotrophy 51
Intracellular_Parasites 27
Methanol_Oxidation 7
Methylotrophy 7
Ureolysis 6
Plant_Pathogen 3
Nitrogen_Fixation 2
Invertebrate_Parasites 2
Human_Pathogens_Septicemia 2
Human_Pathogens_Pneumonia 2
Aromatic_Compound_Degradation 2
Thiosulfate_Respiration 1
Respiration_Of_Sulfur_Compounds 1
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Ligninolysis 1
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