SRR22566604 - Publilia concava

Basic Information

Run: SRR22566604

Assay Type: AMPLICON

Biosample: SAMN32096279

Bytes: 14922586

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Publilia concava

Isolation: -

Biosample Model: -

Collection Date: 2020-06-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566604
14.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 54
Aerobic_Chemoheterotrophy 37
Intracellular_Parasites 36
Fermentation 14
Nitrate_Reduction 13
Human_Pathogens_All 12
Human_Associated 12
Animal_Parasites_Or_Symbionts 12
Nitrate_Ammonification 11
Nitrite_Ammonification 11
Nitrite_Respiration 11
Human_Gut 11
Mammal_Gut 11
Nitrate_Respiration 11
Nitrogen_Respiration 11
Nitrogen_Fixation 5
Plant_Pathogen 4
Ureolysis 4
Methanol_Oxidation 3
Methylotrophy 3
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