SRR22566589 - Strauzia longitudinalis

Basic Information

Run: SRR22566589

Assay Type: AMPLICON

Biosample: SAMN32096237

Bytes: 16689576

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Strauzia longitudinalis

Isolation: -

Biosample Model: -

Collection Date: 2020-06-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566589
15.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 230
Nitrate_Reduction 132
Fermentation 131
Nitrate_Ammonification 130
Nitrite_Ammonification 130
Nitrite_Respiration 130
Human_Pathogens_All 130
Human_Gut 130
Human_Associated 130
Mammal_Gut 130
Animal_Parasites_Or_Symbionts 130
Nitrate_Respiration 130
Nitrogen_Respiration 130
Aerobic_Chemoheterotrophy 99
Intracellular_Parasites 2
Plant_Pathogen 1
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