SRR22566585 - Formica subsericea

Basic Information

Run: SRR22566585

Assay Type: AMPLICON

Biosample: SAMN32096222

Bytes: 7583102

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Quality Control Information

Filter Percentage: 1.0

QC Average Length: 377

Retained Reads: 0

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Formica subsericea

Isolation: -

Biosample Model: -

Collection Date: 2020-06-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566585
7.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 26
Aerobic_Chemoheterotrophy 14
Human_Pathogens_All 12
Human_Associated 12
Animal_Parasites_Or_Symbionts 12
Nitrate_Ammonification 11
Nitrite_Ammonification 11
Nitrite_Respiration 11
Fermentation 11
Human_Gut 11
Mammal_Gut 11
Nitrate_Respiration 11
Nitrate_Reduction 11
Nitrogen_Respiration 11
Intracellular_Parasites 11
Nitrogen_Fixation 4
Methanol_Oxidation 1
Methylotrophy 1
Ureolysis 1
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