SRR22566578 - Colladonus clitellarius

Basic Information

Run: SRR22566578

Assay Type: AMPLICON

Biosample: SAMN32096286

Bytes: 17672220

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Colladonus clitellarius

Isolation: -

Biosample Model: -

Collection Date: 2020-06-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566578
16.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 31
Fermentation 19
Nitrate_Reduction 18
Human_Associated 17
Animal_Parasites_Or_Symbionts 17
Human_Pathogens_All 16
Human_Gut 15
Mammal_Gut 15
Nitrate_Ammonification 14
Nitrite_Ammonification 14
Nitrite_Respiration 14
Nitrate_Respiration 14
Nitrogen_Respiration 14
Aerobic_Chemoheterotrophy 12
Intracellular_Parasites 12
Plant_Pathogen 3
Nitrogen_Fixation 1
Human_Pathogens_Septicemia 1
Human_Pathogens_Pneumonia 1
Aromatic_Compound_Degradation 1
Ureolysis 1
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