SRR22566573 - Toxomerus marginatus

Basic Information

Run: SRR22566573

Assay Type: AMPLICON

Biosample: SAMN32096288

Bytes: 20365989

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Toxomerus marginatus

Isolation: -

Biosample Model: -

Collection Date: 2020-06-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22566573
19.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 68
Aerobic_Chemoheterotrophy 37
Fermentation 27
Nitrate_Reduction 25
Animal_Parasites_Or_Symbionts 23
Human_Pathogens_All 20
Human_Associated 20
Nitrate_Respiration 15
Nitrogen_Respiration 15
Aromatic_Compound_Degradation 14
Nitrate_Ammonification 13
Nitrite_Ammonification 13
Nitrite_Respiration 13
Human_Gut 13
Mammal_Gut 13
Intracellular_Parasites 13
Nitrogen_Fixation 10
Ureolysis 7
Methanol_Oxidation 4
Methylotrophy 4
Human_Pathogens_Septicemia 2
Human_Pathogens_Pneumonia 2
Plant_Pathogen 2
Ligninolysis 1
Invertebrate_Parasites 1
Predatory_Or_Exoparasitic 1
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