SRR22566561 - Polymerus sp.

Basic Information

Run: SRR22566561

Assay Type: AMPLICON

Biosample: SAMN32096298

Bytes: 12359849

Center Name: UNIVERSITY OF IOWA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909794

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Iowa City

Latitude/Longitude: 41.664662 N 91.584727 W

Sample Information

Host: Polymerus sp.

Isolation: -

Biosample Model: -

Collection Date: 2021-05-26

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR22566561

11.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 43

Chemoheterotrophy

Aerobic_Chemoheterotrophy 25

Aerobic_Chemoheterotrophy

Fermentation 17

Fermentation

Animal_Parasites_Or_Symbionts 10

Animal_Parasites_Or_Symbionts

Human_Associated 7

Human_Associated

Human_Pathogens_All 6

Human_Pathogens_All

Human_Gut 4

Human_Gut

Mammal_Gut 4

Mammal_Gut

Nitrate_Reduction 4

Nitrate_Reduction

Intracellular_Parasites 4

Intracellular_Parasites

Ureolysis 4

Ureolysis

Aromatic_Compound_Degradation 3

Aromatic_Compound_Degradation

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Nitrogen_Fixation 2

Nitrogen_Fixation

Nitrate_Ammonification 2

Nitrate_Ammonification

Nitrite_Ammonification 2

Nitrite_Ammonification

Nitrite_Respiration 2

Nitrite_Respiration

Plant_Pathogen 2

Plant_Pathogen

Methanol_Oxidation 1

Methanol_Oxidation

Methylotrophy 1

Methylotrophy

Arsenate_Detoxification 1

Arsenate_Detoxification

Dissimilatory_Arsenate_Reduction 1

Dissimilatory_Arsenate_Reduction

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 1

Human_Pathogens_Pneumonia

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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