SRR22557539 - Musca domestica

Basic Information

Run: SRR22557539

Assay Type: WCS

Biosample: SAMN32082910

Bytes: 22898754

Center Name: SCHOOL OF CLINICAL AND BASIC MEDICAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA909407

Geographic Information

Country: China

Continent: Asia

Location Name: China: Shandong,Jinan

Latitude/Longitude: not applicable

Sample Information

Host: Musca domestica

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR22557539
21.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 39
Aerobic_Chemoheterotrophy 31
Nitrate_Reduction 23
Human_Pathogens_All 16
Human_Associated 16
Animal_Parasites_Or_Symbionts 16
Fermentation 15
Nitrate_Respiration 12
Nitrogen_Respiration 12
Human_Pathogens_Septicemia 3
Ureolysis 3
Human_Pathogens_Pneumonia 2
Human_Pathogens_Diarrhea 2
Human_Gut 2
Mammal_Gut 2
Plant_Pathogen 1
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