SRR21053560 - Oryctes rhinoceros

Basic Information

Run: SRR21053560

Assay Type: AMPLICON

Biosample: SAMN30234226

Bytes: 129889410

Center Name: UNIVERSITY INNSBRUCK

Classification: 16S and ITS

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA868199

Geographic Information

Country: Kenya

Continent: Africa

Location Name: Kenya: Nairobi, Icipe, Animal Rearing and Containment Unit

Latitude/Longitude: 1.13 S 36.53 E

Sample Information

Host: Oryctes rhinoceros

Isolation: -

Biosample Model: -

Collection Date: 2022-01-01

Host Sex: -

Environmental Information

Broad Scale: ENVO:02000022

Local Scale: ENVO:00002003

Medium: ENVO:00000077

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR21053560

123.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 461

Chemoheterotrophy

Aerobic_Chemoheterotrophy 309

Aerobic_Chemoheterotrophy

Fermentation 46

Fermentation

Aromatic_Compound_Degradation 35

Aromatic_Compound_Degradation

Nitrate_Reduction 19

Nitrate_Reduction

Dark_Hydrogen_Oxidation 16

Dark_Hydrogen_Oxidation

Xylanolysis 16

Xylanolysis

Methylotrophy 14

Methylotrophy

Nitrate_Respiration 14

Nitrate_Respiration

Nitrogen_Respiration 14

Nitrogen_Respiration

Nitrite_Respiration 13

Nitrite_Respiration

Nitrate_Denitrification 11

Nitrate_Denitrification

Nitrite_Denitrification 11

Nitrite_Denitrification

Denitrification 11

Denitrification

Ureolysis 11

Ureolysis

Hydrogenotrophic_Methanogenesis 10

Hydrogenotrophic_Methanogenesis

Methanogenesis 10

Methanogenesis

Nitrification 10

Nitrification

Methanol_Oxidation 9

Methanol_Oxidation

Aerobic_Ammonia_Oxidation 9

Aerobic_Ammonia_Oxidation

Cellulolysis 9

Cellulolysis

Nitrogen_Fixation 8

Nitrogen_Fixation

Methanogenesis_By_Co2_Reduction_With_H2 6

Methanogenesis_By_Co2_Reduction_With_H2

Intracellular_Parasites 5

Intracellular_Parasites

Methanotrophy 4

Methanotrophy

Chitinolysis 4

Chitinolysis

Animal_Parasites_Or_Symbionts 4

Animal_Parasites_Or_Symbionts

Hydrocarbon_Degradation 4

Hydrocarbon_Degradation

Predatory_Or_Exoparasitic 4

Predatory_Or_Exoparasitic

Human_Associated 3

Human_Associated

Sulfate_Respiration 2

Sulfate_Respiration

Sulfite_Respiration 2

Sulfite_Respiration

Respiration_Of_Sulfur_Compounds 2

Respiration_Of_Sulfur_Compounds

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Anoxygenic_Photoautotrophy_S_Oxidizing 2

Anoxygenic_Photoautotrophy_S_Oxidizing

Anoxygenic_Photoautotrophy 2

Anoxygenic_Photoautotrophy

Photoautotrophy 2

Photoautotrophy

Photoheterotrophy 2

Photoheterotrophy

Phototrophy 2

Phototrophy

Methanogenesis_By_Disproportionation_Of_Methyl_Groups 1

Methanogenesis_By_Disproportionation_Of_Methyl_Groups

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 1

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2

Aerobic_Nitrite_Oxidation 1

Aerobic_Nitrite_Oxidation

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Human_Pathogens_Diarrhea 1

Human_Pathogens_Diarrhea

Human_Pathogens_All 1

Human_Pathogens_All

Iron_Respiration 1

Iron_Respiration

Plastic_Degradation 1

Plastic_Degradation

Back to Amplicons List

Back to Table