SRR21053557 - Schistocerca gregaria

Basic Information

Run: SRR21053557

Assay Type: AMPLICON

Biosample: SAMN30234229

Bytes: 128731767

Center Name: UNIVERSITY INNSBRUCK

Classification: 16S and ITS

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA868199

Geographic Information

Country: Kenya

Continent: Africa

Location Name: Kenya: Nairobi, Icipe, Animal Rearing and Containment Unit

Latitude/Longitude: 1.13 S 36.53 E

Sample Information

Host: Schistocerca gregaria

Isolation: -

Biosample Model: -

Collection Date: 2022-01-01

Host Sex: -

Environmental Information

Broad Scale: ENVO:02000022

Local Scale: ENVO:00002003

Medium: ENVO:00000077

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR21053557
122.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 66
Aerobic_Chemoheterotrophy 56
Nitrate_Reduction 20
Nitrate_Respiration 13
Nitrogen_Respiration 13
Fermentation 10
Aromatic_Compound_Degradation 10
Methanol_Oxidation 8
Methylotrophy 8
Human_Pathogens_All 8
Human_Associated 8
Animal_Parasites_Or_Symbionts 8
Nitrate_Denitrification 6
Nitrite_Denitrification 6
Denitrification 6
Dark_Hydrogen_Oxidation 6
Nitrite_Respiration 6
Ureolysis 6
Aerobic_Ammonia_Oxidation 2
Nitrification 2
Nitrogen_Fixation 1
Human_Pathogens_Nosocomia 1
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