SRR21053552 - Bos taurus

Basic Information

Run: SRR21053552

Assay Type: AMPLICON

Biosample: SAMN30236225

Bytes: 148223862

Center Name: UNIVERSITY INNSBRUCK

Classification: 16S and ITS

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA868198

Geographic Information

Country: Kenya

Continent: Africa

Location Name: Kenya: Nairobi, Icipe, Animal Rearing and Containment Unit

Latitude/Longitude: 1.13 S 36.53 E

Sample Information

Host: Bos taurus

Isolation: -

Biosample Model: -

Collection Date: 2022-01-01

Host Sex: -

Environmental Information

Broad Scale: ENVO:02000022

Local Scale: ENVO:00002003

Medium: ENVO:00000077

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR21053552
141.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 189
Aerobic_Chemoheterotrophy 88
Fermentation 83
Dark_Hydrogen_Oxidation 25
Hydrogenotrophic_Methanogenesis 23
Methanogenesis 23
Methanogenesis_By_Co2_Reduction_With_H2 18
Aromatic_Compound_Degradation 14
Nitrate_Reduction 14
Human_Associated 10
Animal_Parasites_Or_Symbionts 10
Nitrate_Respiration 8
Nitrogen_Respiration 8
Methylotrophy 7
Ureolysis 7
Methanol_Oxidation 6
Cellulolysis 6
Human_Pathogens_All 6
Nonphotosynthetic_Cyanobacteria 6
Sulfate_Respiration 5
Respiration_Of_Sulfur_Compounds 5
Sulfite_Respiration 4
Nitrate_Denitrification 4
Nitrite_Denitrification 4
Denitrification 4
Nitrite_Respiration 4
Human_Gut 4
Mammal_Gut 4
Methanogenesis_By_Disproportionation_Of_Methyl_Groups 3
Chitinolysis 3
Xylanolysis 2
Photoheterotrophy 2
Phototrophy 2
Reductive_Acetogenesis 2
Methanotrophy 1
Methanogenesis_Using_Formate 1
Nitrogen_Fixation 1
Dark_Sulfide_Oxidation 1
Dark_Sulfur_Oxidation 1
Dark_Thiosulfate_Oxidation 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Human_Pathogens_Diarrhea 1
Hydrocarbon_Degradation 1
Intracellular_Parasites 1
Predatory_Or_Exoparasitic 1
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