SRR20766478 - Solanum lycopersicum

Basic Information

Run: SRR20766478

Assay Type: OTHER

Biosample: SAMN30113581

Bytes: 9240489

Center Name: ICIPE

Classification: 16S

Sequencing Information

Instrument: MinION

Library Layout: SINGLE

Bioproject: PRJNA865471

Geographic Information

Country: Kenya

Continent: Africa

Location Name: Kenya: Loitoktok

Sample Information

Host: Solanum lycopersicum

Isolation: -

Biosample Model: -

Collection Date: 2020-02-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR20766478

8.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

No functional annotation data available

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